The bottom graphs display the cell area and circularity for the cell highlighted in green in the above lineage. The lineage follows the growth of a Nesseiria meningitidis. Measuring morohpological features over timeįollowing cell morphology over several divisions within a lineage. These measurements can be browsed, exported and plotted from within the user interface. TrackMate performs a number of measurements on the objects it tracks. TrackMate can be set to detect and deal with gap-closing events, splitting events and merging events. Tracks with fusion, split and bridging gap events. Tracks with fusion, split and bridging gap events (However, the object contour is displayed only for 2D images.)
Correct movie track process monitor movie#
TrackMate works indifferently in 2D or 3D.īelow is a movie showing the first 2 hours of a C.elegans embryo development, followed in 3D over time using TrackMate (strain: AZ212). Starting with version 7, TrackMate can detect, store and exploit the object contours in 2D.Īlso, TrackMate integrates state-of-the-art segmentation algorithms, such as ilastik, MorphoLibJ, StarDist, and Weka.īelow you can see migrating cells tracked with the StarDist detector implemented in TrackMate. Using state-of-the-art segmentation algorithm TrackMate also has a component to display and annotate cell lineages: TrackScheme. TrackMate is distributed in Fiji, integrates well with ImageJ and Fiji tools, and does not require a complex installation procedure. TrackMate has a user-friendly interface that allows for performing tracking, data visualization, editing results and track analysis in a convenient way. If you use it successfully for your research please be so kind as to cite our work:ĭoi:10.1016/j.ymeth.2016.09.016 Presentation Examples TrackMate user-interface
Please note that TrackMate is available through Fiji, and is based on several publications. TrackMate is your buddy for your everyday tracking.
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